diff --git a/Lectures/L04_ReqContinued/ReqContinued.pdf b/Lectures/L04_ReqContinued/ReqContinued.pdf
index 0dac1f994f9d537e1473d67f7c472928329c5d84..9affb1f89f574bbb85683fbbff6de688e149af41 100644
Binary files a/Lectures/L04_ReqContinued/ReqContinued.pdf and b/Lectures/L04_ReqContinued/ReqContinued.pdf differ
diff --git a/Lectures/L04_ReqContinued/ReqContinued.tex b/Lectures/L04_ReqContinued/ReqContinued.tex
index aa249195592faad3dda580e68c689ae6782583ba..b13563fbcfa9927ef38b8ae977bc9ad3e55a292f 100755
--- a/Lectures/L04_ReqContinued/ReqContinued.tex
+++ b/Lectures/L04_ReqContinued/ReqContinued.tex
@@ -34,7 +34,7 @@
\input{../def-beamer}
-\newcommand{\topic}{04 Requirements Continued DRAFT}
+\newcommand{\topic}{04 Requirements Continued}
\input{../titlepage}
@@ -67,8 +67,13 @@
\bi
\item Add me to your GitHub repos, my GitHub id is \texttt{smiths}
-\item Linked-In
-\item Need schedule for informal presentations and GitHub issues
+\item Assign me an issue to review your problem statements
+\bi
+\item Clearly state that you would like me to review your problem statement
+\item Include a link to your problem statement
+\ei
+\item Updates to SRS template
+\item Commonality analysis should start from SRS template
\ei
\end{frame}
@@ -101,12 +106,8 @@ Final Documentation & Week 13 & Dec 6\\
\begin{itemize}
\item Questions about project choices?
\item Questions about software tools?
-\bi
-\item git?
-\item LaTex?
-\ei
-\item Partial tex files in the blank project template
-\item Problem statement
+\item Questions about problem statements?
+\item Questions about software qualities?
\end{itemize}
\end{frame}
@@ -275,6 +276,8 @@ programs}}
\begin{frame}
\frametitle{Proposed Template}
+From \cite{SmithEtAl2007}
+
\scalebox{0.85}{
\begin{minipage}{1.2\textwidth}
\begin{enumerate}
@@ -535,6 +538,7 @@ PS1.a & $L$ & & &... & &... & & & $\surd$ & ... & & ... & ... \\
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\frame{\frametitle{Why a New Template?}
+From \cite{SmithAndLai2005}
\begin{enumerate}%[<+-| alert@+>]%[iacolor=gray]
%\item Reasons for a new template also form principles for its design
\item One user viewpoint for the physical model
@@ -686,6 +690,7 @@ displacement of the system, or mathematically $\delta U = 0$
\begin{frame}
\frametitle{Kreyman and Parnas Five Variable Model}
\begin{itemize}
+\item See \cite{KreymanAndParnas2002}
\item An alternative approach
\item Unfortunately the numerical algorithm is not hidden in the requirements specification
\item The analogy with real-time systems leads to some confusion
@@ -986,9 +991,21 @@ at the end of a word.}
\begin{itemize}
-\item Definition
+\item Explicit links
+\bi
+\item Within document
+\item Between documents
+\ei
+\item Use labels, cross-references, traceability matricies
\item Common sense suggests traceability improves maintainability
-
+\item Shows consequence of change
+\item Minimizes cost of recertification
+\item Additional advantages
+\bi
+\item Program comprehension
+\item Impact analysis
+\item Reuse
+\ei
\end{itemize}
\end{frame}
@@ -998,11 +1015,6 @@ at the end of a word.}
\begin{frame}[allowframebreaks]
\frametitle{References}
-\nocite{Lai2004, SmithEtAl2004, SmithAndLai2005, IEEE1998, IEEE2000,
- IEEE2000_ThayerAndDorfman, RobertsonAndRobertson1999Vol, DesharnaisEtAl2004,
- JanickiAndKhedri2001, GhezziEtAl2003, KreymanAndParnas2002,
- ParnasAndClements1986, Segal2007_Dagsthul, Segal2008, Segal2007, Segal2005, Dubois2002}
-
\bibliography{../../ReferenceMaterial/References}
\end{frame}
diff --git a/ReferenceMaterial/References.bib b/ReferenceMaterial/References.bib
index 0cef7e1c5ba73b7762bae87853a4782ebf5cac72..d0e27f5e0dade8f5435410ec952d65a1bbdae360 100644
--- a/ReferenceMaterial/References.bib
+++ b/ReferenceMaterial/References.bib
@@ -1,13 +1,54 @@
%% This BibTeX bibliography file was created using BibDesk.
%% http://bibdesk.sourceforge.net/
-%% Created for Spencer Smith at 2017-09-13 17:03:15 -0400
+
+%% Created for Spencer Smith at 2017-09-14 15:18:12 -0400
%% Saved with string encoding Unicode (UTF-8)
+@inproceedings{SmithEtAl2008,
+ Address = {Leipzig, Germany},
+ Author = {W. Spencer Smith and John McCutchan and Jacques Carette},
+ Booktitle = {Proceedings of the First International Workshop on Software Engineering for Computational Science and Engineering (SECSE 2008)},
+ Date-Added = {2017-09-14 19:18:08 +0000},
+ Date-Modified = {2017-09-14 19:18:08 +0000},
+ Month = {May},
+ Note = {8 pp},
+ Organization = {In conjunction with the 30th International Conference on Software Engineering (ICSE)},
+ Title = {Commonality Analysis of Families of Physical Models for use in Scientific Computing},
+ Url = {http://www.cse.msstate.edu/~SECSE08/schedule.htm},
+ Year = {2008},
+ Bdsk-File-1 = {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},
+ Bdsk-Url-1 = {http://www.cse.msstate.edu/~SECSE08/schedule.htm}}
+
+@inproceedings{Smith2006,
+ Address = {Minneapolis / St.\ Paul, Minnesota},
+ Author = {W. Spencer Smith},
+ Booktitle = {Proceedings of the 14th IEEE International Requirements Engineering Conference, RE 2006},
+ Date-Added = {2017-09-14 19:18:04 +0000},
+ Date-Modified = {2017-09-14 19:18:04 +0000},
+ Local-Url = {/Users/smiths/Work/Research/Papers/RE_2006/Smith2006_VersionAsPublished.pdf},
+ Pages = {209--218},
+ Title = {Systematic Development of Requirements Documentation for General Purpose Scientific Computing Software},
+ Url = {http://www.ifi.unizh.ch/req/events/RE06/},
+ Year = {2006},
+ Bdsk-File-1 = {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},
+ Bdsk-Url-1 = {http://www.ifi.unizh.ch/req/events/RE06/}}
+
+@techreport{SmithMcCutchanAndCarette2017,
+ Author = {W. Spencer Smith and John McCutchan and Jacques Carette},
+ Date-Added = {2017-09-14 19:17:57 +0000},
+ Date-Modified = {2017-09-14 19:17:57 +0000},
+ Institution = {McMaster University, Department of Computing and Software},
+ Number = {CAS-17-01-SS},
+ Title = {Commonality Analysis for a Family of Material Models},
+ Type = {Technical Report},
+ Year = {2017},
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+
@article{SmithAndKoothoor2016,
Abstract = {This paper presents a documentation and development method to facilitate the certification of scientific computing software used in the safety analysis of nuclear facilities. To study the problems faced during quality assurance and certification activities, a case study was performed on legacy software used for thermal analysis of a fuelpin in a nuclear reactor. Although no errors were uncovered in the code, 27 issues of incompleteness and inconsistency were found with the documentation. This work proposes that software documentation follow a rational process, which includes a software requirements specification following a template that is reusable, maintainable, and understandable. To develop the design and implementation, this paper suggests literate programming as an alternative to traditional structured programming. Literate programming allows for documenting of numerical algorithms and code together in what is termed the literate programmer's manual. This manual is developed with explicit traceability to the software requirements specification. The traceability between the theory, numerical algorithms, and implementation facilitates achieving completeness and consistency, as well as simplifies the process of verification and the associated certification. },
Author = {W. Spencer Smith and Nirmitha Koothoor},
@@ -24,7 +65,7 @@
Url = {http://www.sciencedirect.com/science/article/pii/S1738573315002582},
Volume = {48},
Year = {2016},
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Bdsk-Url-2 = {http://dx.doi.org/10.1016/j.net.2015.11.008}}
@@ -41,7 +82,7 @@
Title = {Precise Documentation: The Key to Better Software},
Url = {http://dx.doi.org/10.1007/978-3-642-15187-3_8},
Year = {2010},
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@book{Roache1998,
@@ -84,7 +125,7 @@
Title = {Developing Scientific Software},
Volume = {25},
Year = {2008},
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@article{Kelly2015,
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Url = {http://dx.doi.org/10.1016/j.jss.2015.07.027},
Volume = {109},
Year = {2015},
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Bdsk-Url-1 = {http://dx.doi.org/10.1016/j.jss.2015.07.027}}
@inproceedings{Kelly2013,
@@ -119,7 +160,7 @@
Title = {Industrial Scientific Software: A Set of Interviews on Software Development},
Url = {http://dl.acm.org/citation.cfm?id=2555523.2555555},
Year = {2013},
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@article{EasterbrookAndJohns2009,
Address = {Los Alamitos, CA, USA},
@@ -136,7 +177,7 @@
Title = {Engineering the Software for Understanding Climate Change},
Volume = {11},
Year = {2009},
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Bdsk-Url-1 = {http://dx.doi.org/10.1109/MCSE.2009.193}}
@inproceedings{CarverEtAl2007,
@@ -152,7 +193,7 @@
Publisher = {IEEE Computer Society},
Title = {Software Development Environments for Scientific and Engineering Software: A Series of Case Studies},
Year = {2007},
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Bdsk-Url-1 = {http://dx.doi.org/10.1109/ICSE.2007.77}}
@article{AckroydEtAl2008,
@@ -167,7 +208,7 @@
Title = {Scientific Software Development at a Research Facility},
Volume = {25},
Year = {2008},
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@book{VanVliet2000,
@@ -179,7 +220,7 @@
Publisher = {John Wiley \& Sons, Inc.},
Title = {Software Engineering (2nd ed.): Principles and Practice},
Year = {2000},
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@article{TaschukAndWilson2017,
Abstract = {{[Abstract]
@@ -238,7 +279,7 @@ Best practices in software engineering specifically aim to increase software rob
Url = {http://mfkp.org/INRMM/article/14337051},
Volume = {13},
Year = {2017},
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Bdsk-Url-1 = {http://mfkp.org/INRMM/article/14337051},
Bdsk-Url-2 = {http://dx.doi.org/10.1371/journal.pcbi.1005412}}
@@ -254,7 +295,7 @@ Best practices in software engineering specifically aim to increase software rob
Url = {http://arxiv.org/abs/1609.00037},
Volume = {abs/1609.00037},
Year = {2016},
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@inbook{RobertsonAndRobertson2012,
@@ -265,7 +306,7 @@ Best practices in software engineering specifically aim to increase software rob
Publisher = {Atlantic Systems Guild Limited},
Title = {Volere Requirements Specification Template},
Year = {2012},
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@book{HoffmanAndStrooper1995,
Address = {New York, NY, USA},
@@ -277,7 +318,7 @@ Best practices in software engineering specifically aim to increase software rob
Title = {Software Design, Automated Testing, and Maintenance: A Practical Approach},
Url = {http:// citeseer.ist.psu.edu/428727.html},
Year = {1995},
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@article{Parnas1972a,
@@ -291,7 +332,7 @@ Best practices in software engineering specifically aim to increase software rob
Title = {On the Criteria To Be Used in Decomposing Systems into Modules},
Volume = {15},
Year = {1972},
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@article{SmithEtAl2007,
Author = {W. Spencer Smith and Lei Lai and Ridha Khedri},
@@ -305,8 +346,8 @@ Best practices in software engineering specifically aim to increase software rob
Title = {Requirements Analysis for Engineering Computation: A Systematic Approach for Improving Software Reliability},
Volume = {13},
Year = {2007},
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@incollection{Smith2016,
Author = {W. Spencer Smith},
@@ -319,7 +360,7 @@ Best practices in software engineering specifically aim to increase software rob
Publisher = {Taylor \& Francis},
Title = {A Rational Document Driven Design Process for Scientific Computing Software},
Year = {2016},
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@techreport{KreymanAndParnas2002,
@@ -333,7 +374,7 @@ Best practices in software engineering specifically aim to increase software rob
Title = {On Documenting the Requirements for Computer Programs Based on Models of Physical Phenomena},
Type = {SQRL Report},
Year = {2002},
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@article{Wilson2006,
Author = {Gregory V.~Wilson},
@@ -345,7 +386,7 @@ Best practices in software engineering specifically aim to increase software rob
Url = {http://www.americanscientist.org/issues/pub/wheres-the-real-bottleneck-in-scientific-computing},
Volume = {94},
Year = {2006},
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@article{Dubois2002,
@@ -396,7 +437,7 @@ Best practices in software engineering specifically aim to increase software rob
Title = {Models of Scientific Software Development},
Url = {http://www.cse.msstate.edu/~SECSE08/schedule.htm},
Year = {2008},
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@inproceedings{Segal2007,
@@ -412,7 +453,7 @@ Best practices in software engineering specifically aim to increase software rob
Publisher = {IEEE Computer Society},
Title = {Some Problems of Professional End User Developers},
Year = {2007},
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@inproceedings{Segal2007_Dagsthul,
@@ -424,7 +465,7 @@ Best practices in software engineering specifically aim to increase software rob
Title = {End-User Software Engineering and Professional End-User Developers},
Url = {http://drops.dagstuhl.de/opus/volltexte/2007/1095},
Year = {2007},
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@article{ParnasAndClements1986,
@@ -438,7 +479,7 @@ Best practices in software engineering specifically aim to increase software rob
Title = {A Rational Design Process: How and Why to Fake it},
Volume = {12},
Year = {1986},
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@book{GhezziEtAl2003,
Address = {Upper Saddle River, NJ, USA},
@@ -528,7 +569,7 @@ Best practices in software engineering specifically aim to increase software rob
Pages = {107--121},
Title = {A New Requirements Template for Scientific Computing},
Year = {2005},
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@inproceedings{SmithEtAl2004,
Address = {Savannah, Georgia},