Examples/MeshGenToolbox/testdriver/5_test_sr_arc.cpp

+/*****************************************************************************/
+/*  PMGT                                                                     */
+/*                                                                           */
+/*  January, 2007                                                            */
+/*                                                                           */
+/*  Copyright 2007                                                           */
+/*  Wen Yu                                                                   */
+/*  Department of Computing and Software                                     */
+/*  McMaster University                                                      */
+/*  yuw4@mcmaster.ca                                                         */
+/*                                                                           */
+/*  This program may be freely redistributed under the condition that the    */
+/*    copyright notices are not removed. You may distribute modified versions*/
+/*    of this code UNDER THE CONDITION THAT THIS CODE AND ANY MODIFICATIONS  */
+/*    MADE TO IT IN THE SAME FILE REMAIN UNDER COPYRIGHT OF THE ORIGINAL     */
+/*    AUTHOR, BOTH SOURCE AND OBJECT CODE ARE MADE FREELY AVAILABLE WITHOUT  */
+/*    CHARGE, AND CLEAR NOTICE IS GIVEN OF THE MODIFICATIONS.                */
+/*                                                                           */
+/*  This is the test case TC5.                                               */
+/*  This test case is design for test correctness of PMGT.                   */
+/*****************************************************************************/
+#include <iostream>
+
+#ifndef SERVICE
+#include "Service.h"
+#endif
+
+#ifndef COARSENING
+#include "Coarsening.h"
+#endif
+
+#ifndef REFINING
+#include "Refining.h"
+#endif
+
+#ifndef OUTPUT
+#include "Output.h"
+#endif
+
+#ifndef INPUT
+#include "Input.h"
+#endif
+
+#ifndef MESH
+#include "Mesh.h"
+#endif
+
+using namespace PMGT;
+int main(){
+
+	Mesh mesh;
+	Input input;
+	Refining ref;
+	Output output;
+	
+	input.read_file(mesh, "oldVertices.dat", "oldCells.dat");
+
+
+	double x = 0.4;
+	int count = 0;
+	char vfile[32];
+	char* vp = vfile;
+	char cfile[32];
+	char* cp = cfile;
+	char number[8];
+	while(1){
+
+		// refine
+		count++;
+		sprintf(number, "%i", count);
+
+		vp = strcpy(vp, "newVertices");
+		vp = strcat(vp, number);
+		vp = strcat(vp,".dat");
+
+		cp = strcpy(cp, "newCells");
+		cp = strcat(cp, number);
+		cp = strcat(cp,".dat");
+
+		int n = mesh.n_of_c();
+		vector<int> vIds;
+		Point zero; 
+		Vertex vtx[3];
+		
+		zero.clear();
+		zero.push_back(0);
+		zero.push_back(0);
+
+		for (int i=0; i<n; i++){
+			vIds.clear();
+			vIds = mesh.vIds_from_cId(i);
+			for (int j=0; j<3; j++){
+				vtx[j] = mesh.vertex(vIds[j]);
+			}
+
+			double first = vtx[0].distance(zero)-0.7;
+			double second = vtx[1].distance(zero)-0.7;
+			if (first*second<DBL_EPSILON){
+				mesh.cell(i).setMflag(REFINE);
+			}
+			else{
+				double third = vtx[2].distance(zero)-0.7;
+				if (first*third < DBL_EPSILON){
+					mesh.cell(i).setMflag(REFINE);
+				}
+			}
+		}
+
+		ref.longest_edge(mesh);
+		output.write_file(mesh,vp, cp);
+
+		if (count==15){
+			break;
+		}
+	}
+
+	cout << "There are " << count << " meshes generated." << endl;
+	
+	return 0;
+}

Examples/MeshGenToolbox/testdriver/ReadMe.txt

+This is the serial version of PMGT.
+
+There is only one test case (TC5).
+
+To compile this test file, just type "make"
+
+To remove generated object files and the executable file, type "make cleanAll"
+
+To remove generated output files, type "make cleanOutput"
\ No newline at end of file

Examples/MeshGenToolbox/testdriver/makefile

+OBJECTS = ../mgt/Service.o ../mgt/Coarsening.o ../mgt/Refining.o ../mgt/Output.o ../mgt/Input.o ../mgt/Mesh.o
+TEST_OBJ = 5_test_sr_arc.o
+	
+TEST_SRC = 5_test_sr_arc.cpp
+
+ALL_TEST = 5_test_sr_arc	
+
+# all testing executable
+all: $(TEST_OBJ)
+	@cd ../mgt; $(MAKE) $@
+	g++ -o 5_test_sr_arc $(OBJECTS) 5_test_sr_arc.o
+
+$(TEST_OBJ): $(TEST_SRC)
+	g++ -c $(TEST_SRC) -I../mgt
+
+# remove generated testing and PMGT files
+clean:
+	@cd ../mgt; $(MAKE) $@
+	rm -f *.o $(ALL_TEST)
+
+# remove generated testing files.
+# keep the PMGT files
+cleanTest:
+	rm -f $(TEST_OBJ) $(ALL_TEST)
+
+# remove generated output files
+cleanOutput:
+	rm newVertices* newCells*

Examples/MeshGenToolbox/testdriver/makefile2.txt

+OBJECTS = Service.o Coarsening.o Refining.o Output.o Input.o Mesh.o
+TEST_OBJ = 5_test_sr_arc.o
+	
+SOURCES = Service.cpp Coarsening.cpp Refining.cpp Output.cpp Input.cpp Mesh.cpp
+TEST_SRC = 5_test_sr_arc.cpp
+
+HEADERS = Service.h Coarsening.h Refining.h Input.h Input.h Mesh.h Cell.h Edge.h Vertex.h
+
+ALL_TEST = 5_test_sr_arc	
+
+# all testing executable
+all: $(TEST_OBJ)
+	@cd ../mgt; $(MAKE) $@
+	g++ -o 5_test_sr_arc $(OBJECTS) 5_test_sr_arc.o -L../mgt
+	
+5_test_sr_arc:5_test_sr_arc.o
+	g++ -o 5_test_sr_arc $(OBJECTS) 5_test_sr_arc.o
+	
+$(TEST_OBJ): $(TEST_SRC)
+	g++ -c $(TEST_SRC)
+
+# remove generated testing and PMGT files
+clean:
+	@cd src; $(MAKE) $@
+	rm *.o $(ALL_TEST)
+	
+# remove generated testing files.
+# keep the PMGT files
+cleanTest:
+	rm $(TEST_OBJ) $(ALL_TEST)
+	
+# remove generated output files
+cleanOutput:
+	rm newVertices* newCells*
\ No newline at end of file

Examples/MeshGenToolbox/testdriver/oldCells.dat

+0 1 3
+0 3 2

Examples/MeshGenToolbox/testdriver/oldVertices.dat

+0.0 0.0
+1.0 0.0
+0.0 1.0
+1.0 1.0

Examples/MeshGenToolbox/testdriver/show_serial.m

+function show_serial(n)
+
+% plot original mesh
+load oldVertices.dat; load oldCells.dat;
+oldCells(:,:) = oldCells(:,:)+1;
+triplot(oldCells, oldVertices(:,1), oldVertices(:,2))
+title('Original Mesh')
+axis equal
+
+% plot new mesh
+for (i=1:n)
+    vfile = strcat('newVertices',num2str(i),'.dat');
+    vfid = fopen(vfile, 'r');
+    v = fscanf(vfid,'%f %f');
+    fclose(vfid);
+
+    [nv,nnv] = size(v);
+    vv = zeros(nv/2, 2);
+    [mv,mmv] = size(vv);
+    for(j=1:mv)
+        vv(j,1) = v((j-1)*2+1);
+        vv(j,2) = v((j-1)*2+2);
+    end
+    
+    
+    cfile = strcat('newCells',num2str(i),'.dat');
+    cfid = fopen(cfile, 'r');
+    c = fscanf(cfid,'%g %g %g');
+    fclose(cfid);
+
+    [nc,nnc] = size(c);
+    cc = zeros(nc/3, 3);
+    [mc,mmc] = size(cc);
+    for(j=1:mc)
+        cc(j,1) = c((j-1)*3+1);
+        cc(j,2) = c((j-1)*3+2);
+        cc(j,3) = c((j-1)*3+3);
+    end
+    cc(:,:) = cc(:,:)+1;
+    % plot
+    figure
+    triplot(cc, vv(:,1), vv(:,2))
+    t = strcat('Mesh for "', vfile,'" and "', cfile,'"');
+    title(t)
+    axis equal
+end
+
+
+ 
+% cells2(:,:) = cells2(:,:)+1;
+% cells3(:,:) = cells3(:,:)+1;
+%     
+% % plot
+% triplot(cells1, vertices1(:,1), vertices1(:,2))
+% title('Test Creation')
+% axis equal
+% 
+% figure
+% triplot(cells2, vertices2(:,1), vertices2(:,2))
+% title('Test Refinement')
+% axis equal
+% 
+%  figure
+%  triplot(cells3, vertices3(:,1), vertices3(:,2))
+%  title('Test Coarsening')
+%  axis equal
\ No newline at end of file

Examples/MeshGenToolbox/testdriver/testingCode.cpp

+// testing code
+
+#include <iostream>
+
+
+#ifndef MESH
+#include "Mesh.h"
+#endif
+
+#ifndef INPUT
+#include "Input.h"
+#endif
+
+#ifndef OUTPUT
+#include "Output.h"
+#endif
+
+
+#ifndef REFINING
+#include "Refining.h"
+#endif
+
+#ifndef COARSENING
+#include "Coarsening.h"
+#endif
+
+#ifndef SERVICE
+#include "Service.h"
+#endif
+
+
+//using namespace PMGT::Vertex;
+//using namespace PMGT::Edge;
+//using namespace PMGT::Cell;
+//using namespace PMGT::Mesh;
+
+using namespace PMGT;
+
+int main(){
+
+	char* vertexFile = "oldVertices.dat";
+	char* cellFile = "oldCells.dat";
+
+	int i,nc;
+
+	Mesh mesh;
+	Input input;
+	Output output;
+	Refining ref;
+	Coarsening cos;
+	Service sev;
+
+	input.read_file(mesh, vertexFile, cellFile);
+	if (sev.is_valid_mesh(mesh)){
+		cout << "Mesh creatation is ok. The # of cells is " << mesh.n_of_c() << endl;
+	}
+	else{
+		cout << "Mesh creatation is wrong." << endl;
+	}
+
+	nc=mesh.n_of_c();
+	for (i=0; i<nc; i++){
+		mesh.cell(i).setMflag(REFINE);
+	}
+	//ref.split(mesh);
+	ref.longest_edge(mesh);
+	if (sev.is_valid_mesh(mesh)){
+		cout << "Mesh refinement is ok. The # of cells is " << mesh.n_of_c()  << endl;
+	}
+	else{
+		cout << "Mesh refinement is wrong." << endl;
+	}
+
+
+	nc=mesh.n_of_c();
+	for (i=0; i<nc; i++){
+			mesh.cell(i).setMflag(COARSEN);
+	}
+	cos.edge_collapse(mesh);
+	if (sev.is_valid_mesh(mesh)){
+		cout << "Mesh coarsening is ok. The # of cells is " << mesh.n_of_c()  << endl;
+	}
+	else{
+		cout << "Mesh coarsening is wrong." << endl;
+	}
+
+	output.write_file(mesh, "newVertices.dat", "newCells.dat");
+	return 0;
+}

Examples/Repos_2023.csv

+Num,Name,e-mail,GitHub ID,Supervisor,Project Name,Project Topic,Traditional or Drasil or Other,GitHub Repos url,Branch,Prob State Approval?,Domain Expert Reviewer - Primary Reviewer,SRS: Secondary,VnV Plan:Secondary,MG + MIS or Drasil:Secondary
+1,"Balaci,Jason",balacij@mcmaster.ca,balacij,Dr. Jacques Carette & Dr. Spencer Smith,BeamBend,Beam Bending,Drasil, https://github.com/balacij/Drasil/, beamBending,Approved,Sam,Mina,Deesha,Maryam
+2,"Crawford,Sam Joseph",crawfs1@mcmaster.ca,samm82,Dr. Jacques Carette & Dr. Spencer Smith,ChemCode,Balancing chemical equations (might support more stoichiometry as a stretch goal),Drasil, https://github.com/samm82/Drasil, chemCode,Approved,Jason,Deesha,Maryam,Karen
+3,"Mahdipour,Mina",mahdipoa@mcmaster.ca,MinMah23,Dr. Sebastien Mosser ,Inverted Pendulum,Pole Balancing,Traditional,https://github.com/MinMah23/CAS741-Project,main,Approved,Deesha,Maryam,Karen,Joachim
+4,"Patel,Deesha Vipulkumar",pated193@mcmaster.ca,deeshapatel,Dr. Sebastien Mosser ,SolarCookerEnergyCalculation ,Solar Cooker,Traditional, https://github.com/DeeshaPatel/CAS-741-Solar-Cooker, main,Approved,Mina,Karen,Lesley,Sam
+5,"Valian,Maryam",valianm@mcmaster.ca,maryamvalian,Dr. Jelle Hellings,Truss Tool,Truss Analysis Tool,Traditional,https://github.com/maryamvalian/project741,main,Approved,Lesley,Lesley,Joachim,Jason
+6,"Wang,Karen",wangn14@mcmaster.ca,KarenKarenWang,Dr.William Farmer & Dr.Spencer Smith,Conserve energy,Saving energy by moving data center closer to generation,Traditional,https://github.com/KarenKarenWang/cas741_project1,main,Approved,Maryam,Joachim,Jason,Mina
+7,"Wang,Zehong",wangz892@mcmaster.ca,zehongwong,Dr. Neerja Mhaskar,Population Growth,Population Growth Predicting,Drasil,https://github.com/zehongwong/CAS741_Proj,main,Approved,NA,NA,NA,NA
+8,"Wheat,Lesley",wheatd@mcmaster.ca,LesleyWheat,Dr. Mohrenschildt and Dr. Habibi,CEWS,Data Separability Measurement,Traditional,https://github.com/LesleyWheat/CAS741_CEWS,main,Approved,Joachim,Sam,Mina,Deesha
+9,"de Fourestier,Joachim",defourej@mcmaster.ca,joedf,Dr. Nabil Bassim,ImgBeamer,SEM image formation process simulator,Traditional,https://github.com/joedf/CAS741_w23,main,Approved,Karen,Jason,Sam,Lesley
+,,,,,,,,,,,,,,
+"In the cases where a presentation is made, the expert reviewer and the second reviewer will be assigned to ask questions during/after the presentation",,,,,,,,,,,,,,
+Domain expert will also be assigned document inspection tasks by the document author,,,,,,,,,,,,,,

Examples/Repos_2024.csv

+Num, Last Name, First Name, e-mail, GitHub ID, Supervisor, Project Name, Project Topic, Traditional or Drasil or Other, GitHub Repos url, Branch, Prob State Approval?, Domain Expert Reviewer - Primary Reviewer, SRS: Secondary, VnV Plan:Secondary, MG + MIS or Drasil:Secondary
+0, Last Name, First Name, email@mcmaster.ca, githubid, Dr. X, projName, Project Title, traditional or Drasil, https://github.com/..., branch, Yes/No, name, name, name, name
+1, Li, Yiding, liy443@mcmaster.ca, Tan630, Dr. Christopher Anand, agolearn, Derivative-free evolutionary optimizer for real-valued and higher-order functions, Traditional, https://github.com/Tan630/CAS741, main, YES, Fasil Cheema, Fatemeh, Tanya, Phil
+2, Sochaniwsky, Adrian, sochania@mcmaster.ca, adrian-soch, Dr. v. Mohrenschildt, Attitude Check, IMU-based Attitude Estimation, Traditional, https://github.com/adrian-soch/attitude_check, main, YES, Hunter Ceranic, Fasil, Fatemeh, Tanya
+3, Liu, Cynthia, liuy363@mcmaster.ca, CynthiaLiu0805, Dr. Spencer Smith, Bridge Corrosions, A Mathematical Model for Bridge Corrosion, Traditional, https://github.com/CynthiaLiu0805/BridgeCorrosion, main, YES, Phil, Hunter, Fasil, Fatemeh
+4, Ceranic, Hunter, ceranich@mcmaster.ca, cer-hunter, Dr. Denise Geiskkovitch, OAR, Optical Alphabet Recognition using Logistic Regression, Traditional, https://github.com/cer-hunter/OAR-CAS741, main, YES, Adrian Sochaniwsky, Phil, Gaofeng, Yiding
+5, Vreugdenhil, Valerie, vreugdev@mcmaster.ca, vgvreug, Dr. Ned Nedialkov, Stoichiometry Calculator, Stoichiometry calculator for chemical equations, Traditional, https://github.com/vgvreug/StoichCalc, main, YES, Gaofeng, Adrian, Phil, Hunter
+6, Awan, Waqar, awanm15@mcmaster.ca, WaqarAwan376, Dr. Sebastien Mosser, Damped Harmonic Oscillator, Damped Harmonic Oscillator illustrated by online calculator, Traditional, https://github.com/WaqarAwan376/Damped_Harmonic_Oscillator-CAS741, main, YES, Hossain, Gaofeng, Adrian, Fasil
+7, Mirzaei, Morteza, mirzam48@mcmaster.ca, mirzaim, Dr. Jake Doliskani , Inverted Pendulum Control Systems (IPCS), A control system for inverted pendulum problem, Traditional, https://github.com/mirzaim/ipcs, main, YES, Seyed Ali Mousavi, Hossain, Hunter, Adrian
+8, Zhou, Gaofeng, zhoug28@mcmaster.ca, Zhou4truth, Prof.Ned.Nedialkov, Image Feature Detection, image processing problem, traditional, https://github.com/Zhou4truth/imageFeatureDetection, , YES, Valerie, Seyed Ali, Hossain, Xinyu
+9, Wong, Kim Ying, wongk124@mcmaster.ca, gordonwky, Dr. Ned Nedialkov,  Gaussian Mixture Model, Gaussian Mixture Model with EM algorithm, Traditional, https://github.com/gordonwky/GMM_EM, main, YES, Xinyu, Valerie, Seyed Ali, Hossain
+10, Mousavi, Seyed Ali, mousas26@mcmaster.ca, alimousavi1997, Dr. Jake Doliskani, Recommender System, Movie Recommender using KNN algorithm, traditional, https://github.com/alimousavi1997/RecommSys, main , YES, Nada, Xinyu, Valerie, Gaofeng
+11, Cheema, Fasil, cheemf8@mcmaster.ca , cheemf8 , Dr Lingyang Chu , Optimization Solver , Library of Optimization Solvers , traditional , https://github.com/FasilCheema/OptimizationLibrary, main , YES, Morteza Mirzaei, Nada, Xinyu, Valerie
+12, Ma, Xinyu, ma209@mcmaster.ca, lele0007, Dr. Lingyang Chu,  Image Segmentation, Retinal Vessel Segmentation, Traditional, https://github.com/lele0007/Blood-vessel-segmentation, main, YES, Kim Ying, Morteza, Nada, Seyed Ali
+13, Du, Phil, dua11@mcmaster.ca, omltcat, Dr. Spencer Smith, Turbulent Flow, Synthetic Eddy for Turbulent Flow Simulation , Traditional, https://github.com/omltcat/turbulent-flow, main, YES, Cynthia, Kim Ying, Morteza, Nada
+14, Elmasry, Nada, elmasn2@mcmaster.ca, NadaElmasry, Dr.Yingying Wang, Image Reconstruction and Segmentation, Brain Scans Processing, Traditional, https://github.com/NadaElmasry/3D-Image-Reconstruction-Segmentation, main, YES, Yi-Leng, Waqar, Kim Ying, Morteza
+15, Chen, Yi-Leng, cheny997@mcmaster.ca, kypss94132, Dr. Ridha Khedri, Concrete Remaining Life Prediction, Predict remaining life of concrete based on weather data, Traditional, https://github.com/kypss94132/CAS741_YiLeng-Chen, main, YES, Atiyeh, Cynthia, Waqar, Kim Ying
+16, Sayadi, Atiyeh, sayadia@mcmaster.ca, AtiyehSayadi, Dr. Ryszard Janicki, Centrality-In-Graphs, Centrality-In-Graphs, Traditional or Drasil, https://github.com/AtiyehSayadi/Centrality-In-Graphs, main, YES, Yiding, Tanya, Cynthia, Waqar
+17, Djavaherpour, Tanya, djavahet@mcmaster.ca, tanya-jp, Dr. Stephen Kelly, ANN, Artificial Neural Network, Traditional, https://github.com/tanya-jp/ANN-CAS741, main, YES, Fatemeh, Atiyeh, Yi-Leng, Cynthia
+18, Hossain, Al Jubair, hossaa27@mcmaster.ca, XessX, Dr.Yingying Wang, Physics Based Game, Angry Bird Alike, Traditional, https://github.com/XessX/Physics_game_based_on_Angry_Bird_Alike, main, YES, Waqar, Yiding, Atiyeh, Yi-Leng
+19, Norouziani, Reyhaneh, norouf1@mcmaster.ca,rnorouziani, Dr. Onaizah Onaizah,Helmholtz-Coil-Current-Calculator,Helmholtz Coil Current Calculator for Target Magnetic Field, Traditional, https://github.com/rnorouziani/Helmholtz-Coil-Current-Calculator-CAS741, main, YES, Tanya, Yi-Leng, Yiding, Atiyeh

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