add Datastore module which will be the central storage for record

objects, edits to FileProcessor to store the processed records in the
DataStore object.

src/biotree/DataStore.java

+package biotree;
+
+import java.util.ArrayList;
+
+import sort.GeneralCompare;
+import sort.GeneralRange;
+import sort.KDT;
+
+/**
+ * Module for storing Record objects in a central place.
+ * @author Christopher W. Schankula
+ *
+ */
+public class DataStore {
+	public static KDT<Record> records;
+	
+	public static void init(Record[] recs) {
+		GeneralCompare<Record> ax0 = (r0,r1) -> {
+			Record rec0 = (Record) r0;
+			Record rec1 = (Record) r1;
+			if (rec0.getYear() != rec1.getYear())
+				return rec0.getYear() - rec1.getYear();
+			else if (rec0.getMonth() != rec1.getMonth())
+				return rec0.getMonth() - rec1.getMonth();
+			else if (rec0.getDay() != rec1.getDay())
+				return rec0.getDay() - rec1.getDay();
+			else
+				return 0;
+		};
+		GeneralCompare<Record> ax1 = (r0,r1) -> ((Record) r0).getTaxonId() - ((Record) r1).getTaxonId();
+		GeneralCompare<Record> ax2 = (r0,r1) -> Float.compare(((Record) r0).getLatitude(), ((Record) r1).getLatitude());
+		GeneralCompare<Record> ax3 = (r0,r1) -> Float.compare(((Record) r0).getLongitude(), ((Record) r1).getLongitude());
+		ArrayList<GeneralCompare<Record>> axes = new ArrayList<GeneralCompare<Record>>(4);
+		axes.add(ax0);axes.add(ax1);axes.add(ax2);axes.add(ax3);
+		
+		records = new KDT<Record>(axes, recs);
+
+		System.out.println("K:" + records.getK());
+		System.out.println("H:" + records.height());
+		System.out.println("S:" + records.size());
+	}
+}

src/biotree/FileProcessor.java

@@ -3,6 +3,7 @@ import java.io.BufferedReader;
 import java.io.FileNotFoundException;
 import java.io.FileReader;
 import java.io.IOException;
+import java.util.ArrayList;
 import java.util.Scanner; // Testing ONLY
 import java.util.regex.Matcher;
 import java.util.regex.Pattern;
@@ -18,6 +19,7 @@ import java.util.regex.Pattern;
  */
 public class FileProcessor {
 	private static String path = "src/occurrence.csv";
+	private static ArrayList<Record> al = new ArrayList<Record>(1000);
 	
 	/**
 	 * Gets the path string
@@ -53,7 +55,7 @@ public class FileProcessor {
 			
 			br.readLine();	// Reads Past Field Names
 			int i = 0;
-			while ((currentLine = br.readLine()) != null) {
+			while ((currentLine = br.readLine()) != null && i < 100) {
 				//System.out.println(currentLine); //Testing ONLY for checking one line at a time
 				i++;
 				System.out.println("Processed line " + i);
@@ -61,6 +63,9 @@ public class FileProcessor {
 				//s.nextLine(); //Testing ONLY for checking one line at a time
 			}
 			
+			//initialize the storage of records
+			DataStore.init(al.toArray(new Record[al.size()]));
+			
 			s.close();//Testing ONLY
 			br.close();
 			fr.close();
@@ -136,7 +141,7 @@ public class FileProcessor {
 		int errorCount=0;	// TESTING ONLY
 		if (!matchEventId.group(10).equals("NA")) {
 			try{
-				rec = createRecord(Integer.parseInt(matchEventId.group(3)), matchEventId.group(1), BioTree.processRecord(matchEventId.group(10)), Integer.parseInt(matchEventId.group(2)), Float.parseFloat(matchEventId.group(7)), Float.parseFloat(matchEventId.group(8)), Integer.parseInt(matchEventId.group(4)), Integer.parseInt(matchEventId.group(5)), Integer.parseInt(matchEventId.group(6)));
+				al.add(createRecord(Integer.parseInt(matchEventId.group(3)), matchEventId.group(1), BioTree.processRecord(matchEventId.group(10)), Integer.parseInt(matchEventId.group(2)), Float.parseFloat(matchEventId.group(7)), Float.parseFloat(matchEventId.group(8)), Integer.parseInt(matchEventId.group(4)), Integer.parseInt(matchEventId.group(5)), Integer.parseInt(matchEventId.group(6))));
 			} catch(IOException e) {
 				System.out.println("Input Error:" + e);
 			} catch(NullPointerException e) {

src/biotree/Record.java

 package biotree;
 
-public class Record {
+public class Record implements Comparable<Record> {
 	private final int eventId;
 	private final String occurId;
 	private final int taxonId;
@@ -109,4 +109,10 @@ public class Record {
 		return day;
 	}
 
+	@Override
+	public int compareTo(Record o) {
+		// TODO Auto-generated method stub
+		return 0;
+	}
+
 }