Additional references on SE applied to SC

ReferenceMaterial/References.bib

@@ -2,13 +2,103 @@
 %% http://bibdesk.sourceforge.net/
 
 
-%% Created for Spencer Smith at 2018-09-06 23:59:03 -0400 
+%% Created for Spencer Smith at 2018-09-07 00:17:03 -0400 
 
 
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+@article{BenureauAndRougier2017,
+	Adsnote = {Provided by the SAO/NASA Astrophysics Data System},
+	Adsurl = {http://adsabs.harvard.edu/abs/2017arXiv170808205B},
+	Archiveprefix = {arXiv},
+	Author = {{Benureau}, F. and {Rougier}, N.},
+	Date-Added = {2018-09-07 00:16:49 -0400},
+	Date-Modified = {2018-09-07 00:16:49 -0400},
+	Eprint = {1708.08205},
+	Journal = {ArXiv e-prints},
+	Keywords = {Computer Science - General Literature, Computer Science - Computers and Society},
+	Month = aug,
+	Primaryclass = {cs.GL},
+	Title = {{Re-run, Repeat, Reproduce, Reuse, Replicate: Transforming Code into Scientific Contributions}},
+	Year = 2017,
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+
+@inbook{BaileyEtAl2016,
+	Address = {New York},
+	Author = {David H. Bailey and Jonathan M. Borwein and Victoria Stodden},
+	Chapter = {Facilitating reproducibility in scientific computing: principles and practice},
+	Date-Added = {2018-09-07 00:15:38 -0400},
+	Date-Modified = {2018-09-07 00:15:38 -0400},
+	Editor = {Harald Atmanspacher and Sabine Maasen},
+	Pages = {205--232},
+	Publisher = {John Wiley and Sons},
+	Title = {Reproducibility: Principles, Problems, Practices},
+	Year = {2016},
+	Bdsk-File-1 = {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},
+	Bdsk-Url-1 = {http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.432.8990&rep=rep1&type=pdf}}
+
+@article{JohansonAndHasselbring2018,
+	Author = {Arne N. Johanson and Wilhelm Hasselbring},
+	Date-Added = {2018-09-07 00:09:38 -0400},
+	Date-Modified = {2018-09-07 00:09:38 -0400},
+	Journal = {Computing in Science \& Engineering},
+	Pages = {1--31},
+	Title = {Software Engineering for Computational Science: Past, Present, Future},
+	Volume = {Accepted},
+	Year = {2018},
+	Bdsk-File-1 = {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}}
+
+@inproceedings{Smith2018,
+	Author = {W. Spencer Smith},
+	Booktitle = {2018 International Workshop on Software Engineering for Science (held in conjunction with ICSE'18)},
+	Date-Added = {2018-09-07 00:09:16 -0400},
+	Date-Modified = {2018-09-07 00:09:16 -0400},
+	Pages = {1--8},
+	Title = {Beyond Software Carpentry},
+	Year = {2018},
+	Bdsk-File-1 = {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}}
+
+@article{Storer2017,
+	Abstract = {The use of software is pervasive in all fields of science. Associated software development efforts may be very large, long lived, and complex, requiring the commitment of significant resources. However, several authors have argued that the ``gap'' or ``chasm'' between software engineering and scientific programming is a serious risk to the production of reliable scientific results, as demonstrated in a number of case studies. This article reviews the research that addresses the gap, exploring how both software engineering and research practice may need to evolve to accommodate the use of software in science.},
+	Acmid = {3084225},
+	Address = {New York, NY, USA},
+	Annote = {- makes clear case (with examples) that software brings a variety of benefits to scientific research
+- highlights SCS probs with scientific methd, esp repeatability and reproducibilty - examples of retractions
+``There is a need to improve the transfer of existing practices and tools from other applications of software engineering to scientific programming. In addition, due to the specialised nature of scientific programming, there is a need for research to specifically develop methods and tools that are tailored to the domain.''},
+	Articleno = {47},
+	Author = {Storer, Tim},
+	Date-Added = {2018-09-07 00:06:21 -0400},
+	Date-Modified = {2018-09-07 00:06:21 -0400},
+	Doi = {10.1145/3084225},
+	Issn = {0360-0300},
+	Issue_Date = {August 2017},
+	Journal = {ACM Comput. Surv.},
+	Keywords = {Software engineering, scientific programming},
+	Month = aug,
+	Number = {4},
+	Numpages = {32},
+	Pages = {47:1--47:32},
+	Publisher = {ACM},
+	Title = {Bridging the Chasm: A Survey of Software Engineering Practice in Scientific Programming},
+	Url = {http://doi.acm.org/10.1145/3084225},
+	Volume = {50},
+	Year = {2017},
+	Bdsk-File-1 = {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},
+	Bdsk-Url-1 = {http://doi.acm.org/10.1145/3084225},
+	Bdsk-Url-2 = {http://dx.doi.org/10.1145/3084225}}
+
+@book{OliveiraAndStewart2006,
+	Address = {New York, NY, USA},
+	Author = {Suely Oliveira and David E. Stewart},
+	Date-Added = {2018-09-07 00:01:05 -0400},
+	Date-Modified = {2018-09-07 00:01:05 -0400},
+	Isbn = {0521858968},
+	Publisher = {Cambridge University Press},
+	Title = {Writing Scientific Software: A Guide to Good Style},
+	Year = {2006}}
+
 @article{Hatton2007,
 	Author = {Les Hatton},
 	Date-Added = {2018-09-06 23:55:06 -0400},