.gitignore

@@ -22,6 +22,8 @@ cabal.config
 *.nav
 *.out
 *.snm
+*.fdb_latexmk
+*.fls
 *-nup.pdf
 .DS_Store
 .iTeXMac
@@ -30,3 +32,6 @@ cabal.config
 html
 latex
 *.class
+
+# Temporary Excel files
+~$*  

Copyright.txt

 The contents of this folder were created by Spencer Smith.  
 
-(c) 2017 Spencer Smith ALL RIGHTS RESERVED
\ No newline at end of file
+(c) 2018 Spencer Smith ALL RIGHTS RESERVED
\ No newline at end of file

Examples/CaseStudies.txt

+1. Software Engineering for Science
+
+https://gitlab.cas.mcmaster.ca/SEforSC/se4sc
+
+https://gitlab.cas.mcmaster.ca/SEforSC/se4sc/tree/git-svn/SciCompAndSoftEngPapers
+
+
+2. Case Study Examples of Scientific Computing Projects
+
+SWHS: https://github.com/smiths/swhs
+
+GlassBR: https://github.com/smiths/caseStudies/tree/master/CaseStudies/glass
+
+noPCM: https://github.com/smiths/caseStudies/tree/master/CaseStudies/noPCM
+
+SSP: https://github.com/smiths/caseStudies/tree/master/CaseStudies/ssp
+
+GamePhysics: https://github.com/smiths/caseStudies/tree/master/CaseStudies/gamephys
+
+
+3. Document and Code Generation
+
+https://github.com/JacquesCarette/Drasil
\ No newline at end of file

Examples/MeshGenToolbox/ReadMe.txt

+This is the serial version of PMGT, also known as MGT
+
+September, 2008
+
+The directories and their contents are as follows:
+
+/doc		The documentation for the serial version of PMGT, or MGT
+/mgt		The source files for the mesh generation toolbox
+/testdriver	An example test driver that uses mgt to refine a mesh
+
+Readme.txt	This file
\ No newline at end of file

Examples/MeshGenToolbox/doc/Preamble.tex

+\usepackage[top=1.75in,left=1.5in,right=1.5in,bottom=1.25in,verbose]{geometry}%footskip=.25in,
+\usepackage{graphicx}
+\usepackage{rotating}
+\usepackage{amssymb,amsmath}\allowdisplaybreaks[4]
+\usepackage{multirow}
+\usepackage{fancyhdr}
+\usepackage{overpic}
+\usepackage{epsfig}
+\usepackage{setspace}
+\usepackage{makeidx}
+\usepackage{epsfig}
+\usepackage{paralist}
+\usepackage{appendix}
+\usepackage{changebar}
+\usepackage[round]{natbib}
+
+\newcounter{funnum}
+\newcommand{\fthefunnum}{F\thefunnum}
+\newcommand{\fref}[1]{F\ref{#1}}
+
+\newcounter{nfnum}
+\newcommand{\nthenfnum}{N\thenfnum}
+\newcommand{\nref}[1]{N\ref{#1}}
+
+\newcounter{goalnum}
+\newcommand{\gthegoalnum}{G\thegoalnum}
+\newcommand{\gref}[1]{G\ref{#1}}
+
+\newcounter{assnum}
+\newcommand{\atheassnum}{A\theassnum}
+\newcommand{\aref}[1]{A\ref{#1}}
+
+\newcounter{tmnum}
+\newcommand{\tmthetmnum}{TM\thetmnum}
+\newcommand{\tmref}[1]{TM\ref{#1}}
+
+\newcounter{ddnum}
+\newcommand{\dtheddnum}{D\theddnum}
+\newcommand{\dref}[1]{D\ref{#1}}
+
+\newcounter{acnum}
+\newcommand{\actheacnum}{AC\theacnum}
+\newcommand{\acref}[1]{AC\ref{#1}}
+
+\newcounter{ucnum}
+\newcommand{\uctheucnum}{UC\theucnum}
+\newcommand{\uref}[1]{UC\ref{#1}}
+
+\newcounter{mnum}
+\newcommand{\mthemnum}{M\themnum}
+\newcommand{\mref}[1]{M\ref{#1}}
+
+\newcounter{qfnum}
+\newcommand{\qftheqfnum}{QF\theqfnum}
+\newcommand{\qfref}[1]{QF\ref{#1}}
+
+\newcounter{casenum}
+\newcommand{\cthecasenum}{TC\thecasenum}
+\newcommand{\cref}[1]{TC\ref{#1}}
+
+\newcommand{\mi}[1]{#1\index{#1}}
+%\makeindex
+
+\addtocounter{secnumdepth}{3}
+
+\newcommand{\colAwidth}{0.36\textwidth}
+\newcommand{\colBwidth}{0.45\textwidth}
+\newcommand{\firstCol}{0.17\textwidth}
+\newcommand{\secondCol}{0.7\textwidth}
+\newcommand{\colOne}{0.1\textwidth}
+\newcommand{\colTwo}{0.15\textwidth}
+
+\DeclareGraphicsRule{.jpg}{eps}{}{}
+
+\pagestyle{fancy}
+\renewcommand{\headrulewidth}{0pt}
+\renewcommand{\footrulewidth}{0pt}
+\fancyhf{} \fancyfoot[C]{\thepage} \fancyhead[C]{\itshape Wen Yu -- McMaster University -- Computing and Software}
+
+\setlength{\parindent}{0.5in}
+
+\newcommand{\HRule}{\rule{\linewidth}{0.5mm}}
+%\doublespacing
\ No newline at end of file

Examples/MeshGenToolbox/doc/WenRef.bib

+@TECHREPORT{Bauer1995,
+ AUTHOR		="Brian Bauer",
+ TITLE		="Documenting Complicated Programs",
+ YEAR		="1995",
+ NUMBER		="CRL Report 316",
+ INSTITUTION	="Department of Computing and Software, McMaster University"
+}
+
+@inproceedings{Beohm1988,
+ author = {Barry W. Beohm},
+ title = {A Spiral Model for Software Development and Enhancement},
+ booktitle = {Computer},
+ year = {1988},
+ volume = {vol. 21, no. 5},
+ pages = {pp.61 - 72},
+ month = {May},
+ }
+
+
+@inproceedings{Bern1993,
+ author = {Marshall W. Bern and David Eppstein and Shang-Hua Teng},
+ title = {Parallel Construction of Quadtrees and Quality Triangulations},
+ booktitle = {WADS '93: Proceedings of the Third Workshop on Algorithms and Data Structures},
+ year = {1993},
+ isbn = {3-540-57155-8},
+ pages = {188--199},
+ publisher = {Springer-Verlag},
+ address = {London, UK},
+ }
+
+@InProceedings {Berti2000,
+  AUTHOR =       "Guntram Berti",
+  TITLE =        "Generic Components for Grid Data Structures and
+                  Algorithms with {C++}",
+  BOOKTITLE =    "First Workshop on {C++} Template Programming,
+                  Erfurt, Germany",
+  MONTH =        "October 10",
+  YEAR =         "2000",
+
+}
+
+@mastersthesis{Cao2006,
+AUTHOR = {Fang Cao},
+TITLE={A Program Family Approach to Developing Mesh Generators},
+SCHOOL={McMaster University},
+MONTH={April},
+YEAR=2006,
+ANNOTE={NUMBER OF PAGES: vii, 211},
+}
+
+@mastersthesis{Chen2003,
+AUTHOR = {Chien-Hsien Chen},
+TITLE={A Software Engineering Approach to Developing Mesh Generators},
+SCHOOL={McMaster University},
+MONTH={Novermber},
+YEAR=2003,
+ANNOTE={NUMBER OF PAGES: vii, 247},
+}
+
+@MISC(Cirincione1992,
+  AUTHOR = "Joseph Cirincione",
+  TITLE = "The Performance of the Patriot Missile in the Gulf War", 
+  NOTES = "An Edited Draft of a Report prepared for the Government Operations Committee, U.S. House of Representatives",
+  YEAR = "1992",
+  MONTH = "October",
+  )
+
+@BOOK(CSTE2006,
+	AUTHOR = {CSTE},
+  TITLE = "2006 Guide to the CSTE COMMON BODY OF KNOWLEDGE",
+  PUBLISHER = "Quality Assurance Institute",
+  YEAR = 2006)
+  
+@BOOK(Davis1990,
+  AUTHOR = {Alan M. Davis},
+  TITLE = "Software Refquirements: Analysis and Specification",
+  PUBLISHER = "Prentice Hall Inc.",
+  YEAR = 1990)
+
+@BOOK(Dijkstra1972,
+  AUTHOR = {Dijkstra, E. W.},
+  TITLE = "Structured Programming, Chapter Notes on Structured Programming",
+  PUBLISHER = "Academic Press, London",
+  YEAR = 1972)
+
+ @article{Duff1989,
+ author = {I. S. Duff and Roger G. Grimes and John G. Lewis},
+ title = {Sparse matrix test problems},
+ journal = {ACM Trans. Math. Softw.},
+ volume = {15},
+ number = {1},
+ year = {1989},
+ issn = {0098-3500},
+ pages = {1--14},
+
+ publisher = {ACM Press},
+ address = {New York, NY, USA},
+ }
+
+@Article{ElSheikh2003,
+  author = 	 "A. H. ElSheikh",
+  title = 	 "A review of GRUMMP mesh generation code",
+  year = 	 	 "2003",
+  month = 	 "August",
+}
+
+@article{ElSheikh2004,
+ author = {A. H. ElSheikh and S. Smith and S. E. Chidiac},
+ title = {Semi-formal design of reliable mesh generation systems},
+ journal = {Adv. Eng. Softw.},
+ volume = {35},
+ number = {12},
+ year = {2004},
+ issn = {0965-9978},
+ pages = {827--841},
+ 
+ publisher = {Elsevier Science Ltd.},
+ address = {Oxford, UK, UK},
+ }
+
+@article{Floyd1979,
+ author = {Robert W. Floyd},
+ title = {The paradigms of programming},
+ journal = {Commun. ACM},
+ volume = {22},
+ number = {8},
+ year = {1979},
+ issn = {0001-0782},
+ pages = {455--460},
+
+ publisher = {ACM Press},
+ address = {New York, NY, USA},
+ }
+
+
+@BOOK(FreyAndGeorge2000,
+  AUTHOR = {Pascal Jean Frey and Paul-Louis George},
+  TITLE = "Mesh generation Application to Finite Elements",
+  PUBLISHER = "Hermes Science Europe ltd.",
+  YEAR = 2000)
+  
+@BOOK(Ghezzi2003,
+  AUTHOR = {Carlo Ghezzi and Mehdi Jazayeri and Dino Mandrioli},
+  TITLE = "Funcamentals of software Engineering",
+  PUBLISHER = "Pearson Education, Inc.",
+  Address = "Upper Saddle River, New Jersey 07458",
+  YEAR = 2003) 
+
+@InProceedings{Grabmueller2003,
+  author = 	 {Martin Grabm{\"u}ller and Petra Hofstedt},
+  title = 	 {{Turtle: A Constraint Imperative Programming Language}},
+  editor = 	 {Frans Coenen and Alun Preece and Ann Macintosh},
+  booktitle =	 {Twenty-third SGAI International Conference on Innovative
+                  Techniques and Applications of Artificial Intelligence},
+  year =	 {2003},
+  number =	 {XX},
+  series =	 {Research and Development in Intelligent Systems},
+  address =	 {Cambridge, UK},
+  month =	 {December},
+  organization = {British Computer Society},
+  publisher =	 {Springer-Verlag},
+  isbn = 	 {1-85233-780-X},
+}
+
+@BOOK(Gries1993,
+  AUTHOR = {David Gries and Fred B. Schneider},
+  TITLE = "A Logical Approach to Discrete Math",
+  PUBLISHER = "Springer-Verlag New Yourk, Inc.",
+  YEAR = 1993)
+
+@inproceedings{Gueziec1995,
+ author = {Andre Gueziec},
+ title = {Surface simplification with variable tolerance},
+ booktitle = {Second Annual Intl. Symp. on Medical Robotics and Computer Assisted Surgery (MRCAS '95)},
+ year = {1995},
+ month = {November},
+ pages = {132-139},
+ }
+
+@misc{Guillard1993,
+  author = "H. Guillard",
+  title = "Node-nested multi-grid with Delaunay coarsening",
+  text = "Herve Guillard. Node-nested multi-grid with Delaunay coarsening. Technical
+    Report 1898, Institute National de Recherche en Informatique et en Automatique,
+    1993.",
+  year = "1993" }
+
+@BOOK(Hoffman1999,
+  AUTHOR = {Daniel Hoffman and Paul Strooper},
+  TITLE = "Software Design, Automated Testing and Maintenance",
+  PUBLISHER = "International Thomson Computer Press",
+  YEAR = 1999) 
+ 
+@BOOK(IEEE1990,
+  AUTHOR = {IEEE},
+  TITLE = "IEEE Standard Glossary of Software Engineering Terminology ",
+  PUBLISHER = "IEEE Computer Society, Washington, DC, USA",
+  YEAR = 1990)  
+
+@BOOK(IEEE2000,
+  AUTHOR = {IEEE},
+  TITLE = "IEEE Recommended Practice for Software Requirements Specifications",
+  PUBLISHER = "IEEE Computer Society, Washington, DC, USA, 2nd edition",
+  YEAR = 2000)
+
+@BOOK(IEEE1998,
+	AUTHOR = {IEEE},
+  TITLE = "IEEE Guide for Developing System Requirements Specifications",
+  PUBLISHER = "IEEE Computer Society, Washington, DC, USA",
+  YEAR = 1998)
+
+@MISC(Khedri2001,
+  AUTHOR = "R. Dhedri",
+  TITLE = "Software Requirements Activeties", 
+  NOTES = "Lecture Notes",
+  SCHOOL = "Department of Computing and Software, McMaster University",
+  YEAR = 2001
+  )
+
+@MASTERSTHESIS{Koenig2003,
+  TITLE = "An Efficient Implementation of {C}harm++ on {V}irtual
+           {M}achine {I}nterface",
+  AUTHOR = "Gregory Allen Koenig",
+  SCHOOL = "University of Illinois at Urbana-Champaign",
+  YEAR = "2003"
+}
+
+@MASTERSTHESIS{Lai2004,
+AUTHOR = {Lei~Lai},
+TITLE={Requirements Documentation for Engineering Mechanics Software: Guidelines,
+Template and a Case Study},
+SCHOOL={McMaster University},
+MONTH={Sept.},
+YEAR=2004,
+ANNOTE={NUMBER OF PAGES: xx, 256},
+}
+
+@inproceedings{Lamsweerde2001,
+ author = {Axel van Lamsweerde},
+ title = {Goal-Oriented Requirements Engineering: A Guided Tour},
+ booktitle = {Proceedings of the fifth IEEE International Symposium on Requirements Engineering},
+ year = {2001},
+ pages = {249--263},
+ location = {IEEE},
+ publisher = {IEEE Computer Society, Washington, DC, USA},
+ }
+ 
+   @BOOK(Lee2003,
+   AUTHOR = {Copeland, Lee},
+   TITLE = "A Practioner's Guide to Software Test Design.",
+   PUBLISHER = "Artech House Publisher",
+  YEAR = 2003)
+ 
+  @BOOK(Lewis2004,
+   AUTHOR = {William E Lewis and Cunasakaran Veerapollai},
+   TITLE = "Software testing and continuous quality improvement 2nd ed.",
+   PUBLISHER = "CRC Press LLC",
+  YEAR = 2004)
+
+@book{McCall1977,
+ author = {J. McCall and P. Richards and G. Walters},
+ title = {Factors in Software Quality}, 
+ publisher = {NTIS AD-A049-014, 015, 055},
+ year = {1997},
+ month = {Novermber},
+ }
+
+@inproceedings{Miller1997,
+    author = "Miller and Talmor and Teng",
+    title = "Optimal Good-Aspect-Ratio Coarsening for Unstructured Meshes",
+    booktitle = "{SODA}: {ACM}-{SIAM} Symposium on Discrete Algorithms (A Conference on Theoretical and Experimental Analysis of Discrete Algorithms)",
+    year = "1997",
+ }
+
+@inproceedings{Mitchell2000,
+ author = {Scott A. Mitchell and Stephen A. Vavasis},
+ title = {Quality Mesh Generation in Higher Dimensions},
+ booktitle = {SIAM Journal on Computing},
+ year = {2000},
+ isbn = {1095-7111},
+ volume = {29},
+ pages = {1334--1370},
+
+ publisher = {Society for Industrial and Applied Mathematics},
+ address = {3600 University City Science Center, Philadelphia, PA 19104 USA},
+ }
+
+@article{Ollivier2003,
+ author = {Carl F. Ollivier-Gooch},
+ title = {Coarsening unstructured mesh by edge constraction},
+ journal = {International Journal for Numerical Methods in Edgineering},
+ volume = {57},
+ number = {3},
+ year = {2003},
+ month = {May},
+ pages = {391-414},
+ }
+ 
+@inproceedings{Owen1998,
+ author = {Owen, Steven J.},
+ title = {A Survey of Unstructured Mesh Generation Technology},
+ booktitle = {Proceedings 7th International Meshing Roundtable},
+ year = {1998},
+ month = {October},
+ doi = {www.andrew.cmu.edu/user/sowen/survey},
+ address = {Dearborn, MI},
+ }
+
+@article{Parnas1972,
+ author = {David L. Parnas},
+ title = {On the Criteria to be Used in Decomposing System into Modules},
+ journal = {Communications of th ACM},
+ year = {1972},
+ volume = {vol. 15, No. 12},
+ pages = {pp.1053 - 1058},
+ month = {December},
+ }
+
+
+@article{Parnas1976,
+ author = {David L. Parnas},
+ title = {On the Design and Development of Program Families},
+ journal = {IEEE Transactions on Software Engineering},
+ year = {1976},
+
+ }
+
+@inproceedings{Parnas1978,
+ author = {David L. Parnas},
+ title = {Designing Software for Ease of Extension and Contraction},
+ booktitle = {ICSE '78: Proceedings of the 3rd international conference on Software engineering},
+ year = {1978},
+ isbn = {none},
+ pages = {264--277},
+ location = {Atlanta, Georgia, United States},
+ publisher = {IEEE Press},
+ address = {Piscataway, NJ, USA},
+ }
+
+@inproceedings{Parnas1984,
+ author = {D. L. Parnas and P. C. Clements and D. M. Weiss},
+ title = {The Modular Structure of Complex Systems},
+ booktitle = {ICSE '84: Proceedings of the 7th international conference on Software engineering},
+ year = {1984},
+ isbn = {0-8186-0528-6},
+ pages = {408--417},
+ location = {Orlando, Florida, United States},
+ publisher = {IEEE Press},
+ address = {Piscataway, NJ, USA},
+ }
+
+@book{Pressman1999,
+ author = {Roger S. Pressman},
+ title = {Software Engineering, A Practitioner's Approach, fourth Edition}, 
+ publisher = {McGraw-Hill},
+ year = {1999},
+ }
+ 
+  
+  @MISC(Qao727Notes,
+   AUTHOR = "Sanzheng Qiao",
+   TITLE = "Lecture Notes of CAS727: Design of Numerical Software", 
+   NOTES = "Lecture Notes",
+   SCHOOL = "Department of Computing and Software, McMaster University",
+   doi = {http://www.cas.mcmaster.ca/~qiao/courses/cas727/index.html},
+   YEAR = 2004
+   )
+
+ 
+ @inproceedings{Raccoon1995, 
+ author = {Raccoon, L.B.S.},
+ title = {The Chaos Model and the Chaos Life Cycle},
+ booktitle = {ACM Software Engineering Notes},
+ year = {1995},
+ volume = {vol. 20, no. 1},
+ pages = {pp.55 - 66},
+ month = {January},
+ }
+ 
+ @misc{ rivara1995,
+  author = "M. Rivara and P. Inostroza",
+  title = "A discussion on mixed (longest side midpoint insertion) delaunay techniques
+    for the triangulation refinement problem",
+  text = "M. C. Rivara and P. Inostroza, A discussion on mixed (longest side midpoint
+    insertion) delaunay techniques for the triangulation refinement problem,
+    Proceedings 4th International Meshing Roundtable. Albuquerque, pp. 335--346,
+    1995.",
+  year = "1995",
+  }
+
+ 
+ @article{Rivara1997,
+ author = {Rivara, Maria-Celilia},
+ title = {New Longest-Edge Algorithms for the Refinement and/or Improvement of Unstructured Triangulation.},
+ journal = {International Journal for Numerical Methods in Engineering},
+ volume = {40},
+ year = {1997},
+ pages = {3313--3324},
+ publisher = {Wiley},
+ }
+ 
+ @inproceedings{Royce1970,
+  author = {Royce, W.W.},
+  title = {Managing the Development of Large Software System: Concepts and Techniques},
+  booktitle = {Proc. ICSE},
+  year = {1970},
+  month = {August},
+  publisher = {Computer Society Press},
+ }
+ 
+@inproceedings{Ruppert1993,
+ author = {Jim Ruppert},
+ title = {A new and simple algorithm for quality 2-dimensional mesh generation},
+ booktitle = {SODA '93: Proceedings of the fourth annual ACM-SIAM Symposium on Discrete algorithms},
+ year = {1993},
+ isbn = {0-89871-313-7},
+ pages = {83--92},
+ location = {Austin, Texas, United States},
+ publisher = {Society for Industrial and Applied Mathematics},
+ address = {Philadelphia, PA, USA},
+ }
+ 
+@incollection{Shaw95,
+    author = "Mary Shaw and David Garlan",
+    title = "Formulations and Formalisms in Software Architecture",
+    booktitle = "Computer Science Today: Recent Trends and Developments",
+    pages = "307-323",
+    year = "1995",
+    publisher="Springer-Verlag",
+    series="Lecture Notes in Computer Science",
+    editor = "Jan van Leeuwen",
+    volume = "1000",
+  }
+
+
+@TECHREPORT{Smith2004,
+ KEY		="S.~Smith and C.~H.~Chen",
+ AUTHOR		="S. Smith and C. H. Chen",
+ TITLE		="Commonality Analysis for Mesh Generation System",
+ YEAR		="2004",
+ NUMBER		="CAS-04-10-ss",
+ INSTITUTION	="Department of Computing and Software, McMaster University"
+}
+
+@MISC{Smith2006,
+ author = {Spencer Smith},
+ title = {Systematic Development of Requirements Documentation for General Purpose Scientific Computing Software},
+ year = {2006},
+ }
+@article{Smith2007,
+Author = {W. Spencer Smith and Lei Lai and Ridha Khedri},
+Journal = {Reliable Computing, Special Issue on Reliable Engineering Computation},
+Pages = {83--107},
+Title = {Requirements Analysis for Engineering Computation: A Systematic Approach for Improving Software Reliability},
+Year = {2007},
+Volume = {13}
+}
+
+@inproceedings{Smith2005,
+Address = {Paris, France},
+Author = {W. Spencer Smith and Lei Lai},
+Booktitle = {Proceedings of the First International Workshop on Situational Requirements Engineering Processes -- Methods, Techniques and Tools to Support Situation-Specific Requirements Engineering Processes, SREP'05},
+Editor = {J. Ralyt\'{e} and P. \.{A}gerfalk and N. Kraiem},
+
+Organization = {In conjunction with 13th IEEE International Requirements Engineering Conference},
+Pages = {107--121},
+Title = {A New Requirements Template for Scientific Computing},
+Year = {2005}}
+ 
+
+@BOOK(Sommerville1997,
+  AUTHOR = {Ian Sommerville and Pete Sawyer},
+  TITLE = "Requirements Engineering A Good Practice Guide",
+  PUBLISHER = "John Wiley and Sons",
+  YEAR = 1997)
+
+@BOOK(Sommerville1992,
+  AUTHOR = {Ian Sommerville},
+  TITLE = "Software Engineering",
+  PUBLISHER = "Addison-Wesley Publishing Company",
+  YEAR = 1992)
+
+ 
+@article{Tomayko1995,
+author = {James Tomayko},
+title = {Anecdotes},
+journal = {IEEE Annals of the History of Computing},
+volume = {17},
+number = {2},
+year = {1995},
+issn = {1058-6180},
+pages = {62-63},
+
+publisher = {IEEE Computer Society},
+address = {Los Alamitos, CA, USA},
+}
+
+@MISC{Volere2001,
+ author = {James Robertson and Suzanne Robertson},
+ title = {Volere Requirements Specification Template},
+ year = {2001},
+ doi = {www.systemsguild.com},
+ publisher = {The Atlantic Systems Guild Inc.},
+ }
+
+ @article{Wilson2006,
+ author = {Gregory V. Wilson},
+ title = {Where's the Real Bottleneck in Scientific Computing: Scientists would do well to pick up some tools widely used in the software industry},
+ journal = {American Scientist},
+ volume = {94},
+ number = {1},
+ page = {5},
+ year = {2006},
+ month = {January -- Febrary},
+
+ }
+
+
+@book{Zienkiewicz2005,
+Author = {O. C. Zienkiewicz and R. L Taylor and J. Z. Zhu},
+Edition = {6th},
+Publisher = {Elsevier Butterworth-Heinemann},
+Title = {The Finite Element Method Its Basis and Fundamentals},
+Year = {2005}}
+
+ @MISC{AOMD2006,
+  AUTHOR = {SCOREC},
+  TITLE = {Algorithm Oriented Mesh Database}, 
+  
+  URL = {http://www.scorec.rpi.edu/AOMD/},
+  YEAR = {Last Access: January, 2006},
+  }
+@MISC{Blackpawn,
+  AUTHOR = {Blackpawn},
+  TITLE = {Point in Triangle Test}, 
+  
+  URL = {http://www.blackpawn.com/texts/pointinpoly/default.html},
+  YEAR = {Last Access: January, 2006},
+  }
+
+@MISC{OwenWeb2006,
+  AUTHOR = {Owen, Steven J.},
+  TITLE = {Meshing Research Corner}, 
+  URL = {http://www.andrew.cmu.edu/user/sowen/mesh.html},
+  YEAR = {Last Access: January, 2006},
+  }
+
+@MISC{sharcnet2006,
+  AUTHOR = "SHARCNET",
+  TITLE = "Shared Hierarchical Academic Research Computing Network", 
+
+  URL = {www.sharcnet.ca},
+  YEAR = {Last Access: January, 2006},
+  } 
+@MISC{Triangle2006,
+  AUTHOR = "Jonathan Shewchuk",
+  TITLE = "Triangle, A Two-Dimensional Quality Mesh Generator and Delaunay Triangulator",  
+
+  URL = {http://www.cs.cmu.edu/\~ quake/triangle.html},
+  YEAR = {Last Access: January, 2006},
+  }
+
+@MISC(Wikipedia,
+  AUTHOR = "Wikipedia",
+  TITLE = "Waterfall Model",  
+
+  URL = {http://en.wikipedia.org/wiki/Waterfall\_model},
+  YEAR = {Last Access: January, 2006},
+  )
+  
+@MISC{OpenMesh2006,
+  AUTHOR = "OpenMesh",
+  TITLE = "OpenMesh",  
+
+  URL = {http://www.openmesh.org/},
+  YEAR = {Last Access: January, 2006},
+  }
+
+@MISC{Franklin2006,
+  AUTHOR = "W. Randolph Franklin ",
+  TITLE = "PNPOLY - Point Inclusion in Polygon Test",  
+
+  URL = {http://www.ecse.rpi.edu/Homepages/wrf/Research/Short\_Notes/ pnpoly.html},
+  YEAR = {Last Access: January, 2006},
+  }
+
+ 
+
+

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+  rad rad scale 0 0 1 180 360 arc tMatrix setmatrix lrx rad sub lry rad
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